Package: evian 2.1.0
evian: Evidential Analysis of Genetic Association Data
Evidential regression analysis for dichotomous and quantitative outcome data. The following references described the methods in this package: Strug, L. J., Hodge, S. E., Chiang, T., Pal, D. K., Corey, P. N., & Rohde, C. (2010) <doi:10.1038/ejhg.2010.47>. Strug, L. J., & Hodge, S. E. (2006) <doi:10.1159/000094709>. Royall, R. (1997) <ISBN:0-412-04411-0>.
Authors:
evian_2.1.0.tar.gz
evian_2.1.0.zip(r-4.7)evian_2.1.0.zip(r-4.6)evian_2.1.0.zip(r-4.5)
evian_2.1.0.tgz(r-4.6-any)evian_2.1.0.tgz(r-4.5-any)
evian_2.1.0.tar.gz(r-4.7-any)evian_2.1.0.tar.gz(r-4.6-any)
evian_2.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
evian/json (API)
| # Install 'evian' in R: |
| install.packages('evian', repos = c('https://struglab.r-universe.dev', 'https://cloud.r-project.org')) |
- evian_binary_bim - Example map data for evian_binary_raw.
- evian_binary_raw - Example dataset with a binary outcome.
- evian_linear_bim - Example map data for evian_linear_raw.
- evian_linear_raw - Example dataset with a quantative outcome.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:e65295408d. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 119 | ||
| source / vignettes | OK | 170 | ||
| linux-release-x86_64 | NOTE | 120 | ||
| macos-release-arm64 | NOTE | 178 | ||
| macos-oldrel-arm64 | NOTE | 147 | ||
| windows-devel | NOTE | 77 | ||
| windows-release | NOTE | 80 | ||
| windows-oldrel | NOTE | 75 | ||
| wasm-release | OK | 97 |
Exports:adjustModelcalculateEvianMLEcalculateGLRdensityPlotevianexpandBoundgetGridBoundglrglr_plotmultiLine_plotrobust_forClustersubsetData
Dependencies:codetoolsdoParallelforeachiteratorslatticeMASSnlmeProfileLikelihoodsandwichzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Genotype coding adjusement | adjustModel |
| Profile likelihood calculation using regression models | calculateEvianMLE |
| Profile likelihood calculation using regression models | calculateGLR |
| Plot profile likelihood density for a single SNP. | densityPlot |
| Evidential analysis for genetic data using regression models | evian |
| Example map data for evian_binary_raw. | evian_binary_bim |
| Example dataset with a binary outcome. | evian_binary_raw |
| Example map data for evian_linear_raw. | evian_linear_bim |
| Example dataset with a quantative outcome. | evian_linear_raw |
| A recursive function that expands the grid search for MLE. | expandBound |
| Obtain the range of the grid where MLE will be searched at | getGridBound |
| Generalized Likelihood Ratio test | glr |
| Plot methods for multiple glr result in a genomic region. | glr_plot |
| Plot methods for multiple likelihood intervals in a genomic region. | multiLine_plot |
| Robust adjustment function | robust_forCluster |
| interior subsetting function | subsetData |
