Package: evian 2.1.0
evian: Evidential Analysis of Genetic Association Data
Evidential regression analysis for dichotomous and quantitative outcome data. The following references described the methods in this package: Strug, L. J., Hodge, S. E., Chiang, T., Pal, D. K., Corey, P. N., & Rohde, C. (2010) <doi:10.1038/ejhg.2010.47>. Strug, L. J., & Hodge, S. E. (2006) <doi:10.1159/000094709>. Royall, R. (1997) <ISBN:0-412-04411-0>.
Authors:
evian_2.1.0.tar.gz
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evian_2.1.0.tgz(r-4.4-any)evian_2.1.0.tgz(r-4.3-any)
evian_2.1.0.tar.gz(r-4.5-noble)evian_2.1.0.tar.gz(r-4.4-noble)
evian_2.1.0.tgz(r-4.4-emscripten)evian_2.1.0.tgz(r-4.3-emscripten)
evian.pdf |evian.html✨
evian/json (API)
| # Install 'evian' in R: |
| install.packages('evian', repos = c('https://struglab.r-universe.dev', 'https://cloud.r-project.org')) |
- evian_binary_bim - Example map data for evian_binary_raw.
- evian_binary_raw - Example dataset with a binary outcome.
- evian_linear_bim - Example map data for evian_linear_raw.
- evian_linear_raw - Example dataset with a quantative outcome.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 years agofrom:e65295408d. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 16 2024 |
| R-4.5-win | NOTE | Sep 16 2024 |
| R-4.5-linux | NOTE | Sep 16 2024 |
| R-4.4-win | NOTE | Sep 16 2024 |
| R-4.4-mac | NOTE | Sep 16 2024 |
| R-4.3-win | NOTE | Sep 16 2024 |
| R-4.3-mac | NOTE | Sep 16 2024 |
Exports:adjustModelcalculateEvianMLEcalculateGLRdensityPlotevianexpandBoundgetGridBoundglrglr_plotmultiLine_plotrobust_forClustersubsetData
Dependencies:codetoolsdoParallelforeachiteratorslatticeMASSnlmeProfileLikelihoodsandwichzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Genotype coding adjusement | adjustModel |
| Profile likelihood calculation using regression models | calculateEvianMLE |
| Profile likelihood calculation using regression models | calculateGLR |
| Plot profile likelihood density for a single SNP. | densityPlot |
| Evidential analysis for genetic data using regression models | evian |
| Example map data for evian_binary_raw. | evian_binary_bim |
| Example dataset with a binary outcome. | evian_binary_raw |
| Example map data for evian_linear_raw. | evian_linear_bim |
| Example dataset with a quantative outcome. | evian_linear_raw |
| A recursive function that expands the grid search for MLE. | expandBound |
| Obtain the range of the grid where MLE will be searched at | getGridBound |
| Generalized Likelihood Ratio test | glr |
| Plot methods for multiple glr result in a genomic region. | glr_plot |
| Plot methods for multiple likelihood intervals in a genomic region. | multiLine_plot |
| Robust adjustment function | robust_forCluster |
| interior subsetting function | subsetData |
